Modelling stress-induced transposon activity

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Publications

2016

  • Startek M, Nogły J, Grzebelus D, Gambin A, 2016, TRANScendence: transposable elements database and de-novo mining tool allows inferring TEs activity chronology , Intern. Symp. on Bioinf. Res. and App. status: submitted
  • Startek M, 2016, Moving optimum in Fisher's geometric model: an analytical approach , Evolution status: submitted
  • Startek M, 2016, An asymptotically optimal, online algorithm for weighted random sampling with replacement , Jour. of the ACM status: submitted
  • Gogolewski K, Startek M, Gambin A, Le Rouzic A, 2016, Modelling the proliferation of transposable elements in populations under environmental stress , arXiv status: submitted

2015

  • Startek M, Szafranski P, Gambin T, Campbell IM, Hixson P, Shaw CA, Stankiewicz P, Gambin A, 2015, Genome-wide analyses of LINE-LINE-mediated nonallelic homologous recombination , Nucleic Acid Res., 43(4):2188-2198 doi: 10.1093/nar/gku1394
  • Stawujak K, Startek M, Gambin A, Grzebelus D, 2015, MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula , Genetica, 143(4): 433-440 doi: 10.1007/s10709-015-9842-5
  • Nogły J, 2015,
    Reconstructing evolutionary history of transposable elements, Thesis remark: Master's Thesis in Computer Science

2014

  • Campbell IM, Gambin T, Dittwald P, Beck CR, Shuvarikov A, Hixson P, Patel A, Gambin A, Shaw CA, Rosenfeld JA, Stankiewicz P, 2014,
    Human endogenous retroviral elements promote genome instability via non-allelic homologous recombination, BMC Biol., 12: 74. doi:10.1186/s12915-014-0074-4
  • Startek M, 2014,
    Modelling the evolution of mobile genetic elements, Thesis remark: PhD dissertation
  • Gogolewski K, 2014,
    Computational modeling of stress-induced proliferation of transposable elements in sexual populations, Thesis remark: Master's Thesis in Computer Science
  • Gogolewski K, 2014,
    Modelling stress-induced transposons proliferation, Thesis remark: Bachelor's Thesis in Mathematics [PL]

2013

  • Startek M, Le Rouzic A, Capy P, Grzebelus D, Gambin A, 2013,
    Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations., Theo. Pop. Bio., 90: 145-151. doi:10.1016/j.tpb.2013.07.004
  • Shuvarikov A, Campbell IM, Dittwald P, Neill NJ, Bialer MG, Moore C, Wheeler PG, Wallace SE, Hannibal MC, Murray MF, Giovanni MA, Terespolsky D, Sodhi S, Cassina M, Viskochil D, Moghaddam B, Herman K, Brown CW, Beck CR, Gambin A, Cheung SW, Patel A, Lamb AN, Shaffer LG, Ellison JW, Ravnan JB, Stankiewicz P, Rosenfeld JA, 2014,
    Recurrent HERV-H-mediated 3q13.2-q13.31 deletions cause a syndrome of hypotonia and motor, language, and cognitive delays, Human Mutation, 34(10): 1415-1423. doi:10.1002/humu.22384