Output format
The output is provided to the user via e-mail. It consists of 3
files:
- MMF-XXXX-clusters.txt - a text file containing clusters of motifs. For each of the clusters, the PWM of the consensus motif is reported.
- MMF-XXXX-newick.txt - a tree (in the Newick format) containing the tree obtained during hierarchical clustering of all motifs.
- MMF-XXXX-raw.txt - the file containing the raw output of all motif discovery programs selected by the user.
XXXXXXXXXX_YY_NXXXXXX represents the consensus sequence of the motif, YY is an abbreviated name of the program which reported this motif, and N corresponds to the ranking of the motif given by the respective method.
Abbreviated application names:
- bi: BioProspector
- me: MEME
- md: MDScan
- we: Weeder
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